unicycler command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

unicycler: command not found

or when using sudo you get the following error message

sudo: unicycler: command not found

Solutions to unicycler: command not found

How To Fix unicycler: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu unicycler is provided by unicycler package.

unicycler is:

Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.

To fix this problem, we can install more using the command below.

sudo apt-get -y install unicycler

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install unicycler.

sudo apt -y install unicycler

Or if you have aptitude installed you can use the following command.

sudo aptitude install unicycler

Summary

In this tutorial we learn how to fix unicycler command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.