seqnr command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

seqnr: command not found

or when using sudo you get the following error message

sudo: seqnr: command not found

Solutions to seqnr: command not found

How To Fix seqnr: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu seqnr is provided by embassy-domsearch package.

embassy-domsearch is:

The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in this DOMSEARCH release are seqfraggle (removes fragment sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove ambiguous classified sequences from DHF files) and seqwords (Generates DHF files from keyword search of UniProt).

To fix this problem, we can install more using the command below.

sudo apt-get -y install embassy-domsearch

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install embassy-domsearch.

sudo apt -y install embassy-domsearch

Or if you have aptitude installed you can use the following command.

sudo aptitude install embassy-domsearch

Summary

In this tutorial we learn how to fix seqnr command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.