pigx-rnaseq command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

pigx-rnaseq: command not found

or when using sudo you get the following error message

sudo: pigx-rnaseq: command not found

Solutions to pigx-rnaseq: command not found

How To Fix pigx-rnaseq: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu pigx-rnaseq is provided by pigx-rnaseq package.

pigx-rnaseq is:

This package provides a automated workflow for the automated analysis of RNA-seq experiments. A series of well-accecpted tools are connected in Python scripts and controlled via snakemake. This supports the parallel execution of these workflows and provides checkpointing, such that interrupted workflows can take up their work again.

To fix this problem, we can install more using the command below.

sudo apt-get -y install pigx-rnaseq

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install pigx-rnaseq.

sudo apt -y install pigx-rnaseq

Or if you have aptitude installed you can use the following command.

sudo aptitude install pigx-rnaseq

Summary

In this tutorial we learn how to fix pigx-rnaseq command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.