pauvre command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

pauvre: command not found

or when using sudo you get the following error message

sudo: pauvre: command not found

Solutions to pauvre: command not found

How To Fix pauvre: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu pauvre is provided by python3-pauvre package.

python3-pauvre is:

Pauvre is a plotting package designed for nanopore and PacBio long reads.

This package currently hosts four scripts for plotting and/or printing stats.

pauvre marginplot Takes a fastq file as input and outputs a marginal histogram with a heatmap. pauvre stats Takes a fastq file as input and prints out a table of stats, including how many basepairs/reads there are for a length/mean quality cutoff. This is also automagically called when using pauvre marginplot pauvre redwood Method of representing circular genomes. A redwood plot contains long reads as “rings” on the inside, a gene annotation “cambrium/phloem”, and a RNAseq “bark”. The input is .bam files for the long reads and RNAseq data, and a .gff file for the annotation. pauvre synteny Makes a synteny plot of circular genomes. Finds the most parsimonius rotation to display the synteny of all the input genomes with the fewest crossings-over. Input is one .gff file per circular genome and one directory of gene alignments.

To fix this problem, we can install more using the command below.

sudo apt-get -y install python3-pauvre

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install python3-pauvre.

sudo apt -y install python3-pauvre

Or if you have aptitude installed you can use the following command.

sudo aptitude install python3-pauvre

Summary

In this tutorial we learn how to fix pauvre command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.