optimir command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

optimir: command not found

or when using sudo you get the following error message

sudo: optimir: command not found

Solutions to optimir: command not found

How To Fix optimir: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu optimir is provided by optimir package.

optimir is:

OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression.

OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, & study the impact of genetic variations on polymiRs’ expression.

To fix this problem, we can install more using the command below.

sudo apt-get -y install optimir

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install optimir.

sudo apt -y install optimir

Or if you have aptitude installed you can use the following command.

sudo aptitude install optimir

Summary

In this tutorial we learn how to fix optimir command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.