miramer command not found
Introduction
When you run more command in linux terminal / console, you get the following error message
miramer: command not found
or when using sudo you get the following error message
sudo: miramer: command not found
Solutions to miramer: command not found
How To Fix miramer: command not found in Ubuntu / Debian / Kali Linux / Raspbian
In Ubuntu miramer is provided by mira-assembler package.
mira-assembler is:
The mira genome fragment assembler is a specialised assembler for sequencing projects classified as ‘hard’ due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof.
The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments.
The package provides the following executables: Binaries provided:
- mira: for assembly of genome sequences
- miramem: estimating memory needed to assemble projects.
- mirabait: a “grep” like tool to select reads with kmers up to 256 bases.
- miraconvert: is a tool to convert, extract and sometimes recalculate all kinds of data related to sequence assembly files.
To fix this problem, we can install more using the command below.
sudo apt-get -y install mira-assembler
This command might take some time to finish depending on your machine internet connection.
You can also use apt command to install mira-assembler.
sudo apt -y install mira-assembler
Or if you have aptitude installed you can use the following command.
sudo aptitude install mira-assembler
Summary
In this tutorial we learn how to fix miramer command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.