kleborate command not found

In this troubleshooting guide we learn how to fix kleborate command not found error message

Introduction

When you run more command in linux terminal / console, you get the following error message

kleborate: command not found

or when using sudo you get the following error message

sudo: kleborate: command not found

In Ubuntu kleborate is provided by kleborate package.

kleborate is:

Kleborate is a tool to screen Klebsiella genome assemblies for:

MLST sequence type
species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb)
virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2)
antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations
K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive

To fix this problem, we can install more using the command below.

sudo apt-get -y install kleborate

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install kleborate.

sudo apt -y install kleborate

Or if you have aptitude installed you can use the following command.

sudo aptitude install kleborate

In this tutorial we learn how to fix kleborate command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.