geneparse command not found

In this troubleshooting guide we learn how to fix geneparse command not found error message

Introduction

When you run more command in linux terminal / console, you get the following error message

geneparse: command not found

or when using sudo you get the following error message

sudo: geneparse: command not found

Solutions to geneparse: command not found

How To Fix geneparse: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu geneparse is provided by murasaki package.

murasaki is:

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

  • exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes))
  • scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
  • unlimited pattern length
  • repeat tolerant
  • intelligent noise reduction

To fix this problem, we can install more using the command below.

sudo apt-get -y install murasaki

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install murasaki.

sudo apt -y install murasaki

Or if you have aptitude installed you can use the following command.

sudo aptitude install murasaki

Summary

In this tutorial we learn how to fix geneparse command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.