cuteSV command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

cuteSV: command not found

or when using sudo you get the following error message

sudo: cuteSV: command not found

Solutions to cuteSV: command not found

How To Fix cuteSV: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu cuteSV is provided by cutesv package.

cutesv is:

Long-read sequencing enables the comprehensive discovery of structural variations (SVs). However, it is still non-trivial to achieve high sensitivity and performance simultaneously due to the complex SV characteristics implied by noisy long reads.

cuteSV is a sensitive, fast and scalable long-read-based SV detection approach. cuteSV uses tailored methods to collect the signatures of various types of SVs and employs a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection. Benchmarks on real Pacific Biosciences (PacBio) and Oxford Nanopore Technology (ONT) datasets demonstrate that cuteSV has better yields and scalability than state-of-the-art tools.

To fix this problem, we can install more using the command below.

sudo apt-get -y install cutesv

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install cutesv.

sudo apt -y install cutesv

Or if you have aptitude installed you can use the following command.

sudo aptitude install cutesv

Summary

In this tutorial we learn how to fix cuteSV command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.