compare_genomes command not found

In this troubleshooting guide we learn how to fix compare_genomes command not found error message

Introduction

When you run more command in linux terminal / console, you get the following error message

compare_genomes: command not found

or when using sudo you get the following error message

sudo: compare_genomes: command not found

In Ubuntu compare_genomes is provided by mcaller package.

mcaller is:

H-C-aller | H

This program is designed to call m6A from nanopore data using the differences between measured and expected currents.

To fix this problem, we can install more using the command below.

sudo apt-get -y install mcaller

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install mcaller.

sudo apt -y install mcaller

Or if you have aptitude installed you can use the following command.

sudo aptitude install mcaller

In this tutorial we learn how to fix compare_genomes command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.