bref3 command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

bref3: command not found

or when using sudo you get the following error message

sudo: bref3: command not found

Solutions to bref3: command not found

How To Fix bref3: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu bref3 is provided by beagle package.

beagle is:

Beagle performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Genotypic imputation works on phased haplotypes using a Li and Stephens haplotype frequency model. Beagle also implements the Refined IBD algorithm for detecting homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.

To fix this problem, we can install more using the command below.

sudo apt-get -y install beagle

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install beagle.

sudo apt -y install beagle

Or if you have aptitude installed you can use the following command.

sudo aptitude install beagle

Summary

In this tutorial we learn how to fix bref3 command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.