biomaj-cli command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

biomaj-cli: command not found

or when using sudo you get the following error message

sudo: biomaj-cli: command not found

Solutions to biomaj-cli: command not found

How To Fix biomaj-cli: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu biomaj-cli is provided by python3-biomaj3-cli package.

python3-biomaj3-cli is:

BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily.

BioMAJ3 is a rewrite of BioMAJ v1.x, see online documentation for migration.

This package contains the client to execute BioMAJ3 or communicate with the BioMAJ daemon process (python3-biomaj3-daemon) in case of microservice config.

To fix this problem, we can install more using the command below.

sudo apt-get -y install python3-biomaj3-cli

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install python3-biomaj3-cli.

sudo apt -y install python3-biomaj3-cli

Or if you have aptitude installed you can use the following command.

sudo aptitude install python3-biomaj3-cli

Summary

In this tutorial we learn how to fix biomaj-cli command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.