bio-vcf command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

bio-vcf: command not found

or when using sudo you get the following error message

sudo: bio-vcf: command not found

Solutions to bio-vcf: command not found

How To Fix bio-vcf: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu bio-vcf is provided by bio-vcf package.

bio-vcf is:

Bio-vcf provides a domain specific language (DSL) for processing the VCF format. Record named fields can be queried with regular expressions, e.g.

sample.dp>20 and rec.filter !~ /LowQD/ and rec.tumor.bcount[rec.alt]>4

Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf is not only very fast for genome-wide (WGS) data, it also comes with a really nice filtering, evaluation and rewrite language and it can output any type of textual data, including VCF header and contents in RDF and JSON.

To fix this problem, we can install more using the command below.

sudo apt-get -y install bio-vcf

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install bio-vcf.

sudo apt -y install bio-vcf

Or if you have aptitude installed you can use the following command.

sudo aptitude install bio-vcf

Summary

In this tutorial we learn how to fix bio-vcf command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.