SIBsim4 command not found

In this troubleshooting guide we learn how to fix SIBsim4 command not found error message

Introduction

When you run more command in linux terminal / console, you get the following error message

SIBsim4: command not found

or when using sudo you get the following error message

sudo: SIBsim4: command not found

Solutions to SIBsim4: command not found

How To Fix SIBsim4: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu SIBsim4 is provided by sibsim4 package.

sibsim4 is:

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals:

  • speed improvement;
  • allow large, chromosome scale, DNA sequences to be used;
  • provide more detailed output about splice types;
  • provide more detailed output about polyA sites;
  • misc code cleanups and fixes.

To fix this problem, we can install more using the command below.

sudo apt-get -y install sibsim4

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install sibsim4.

sudo apt -y install sibsim4

Or if you have aptitude installed you can use the following command.

sudo aptitude install sibsim4

Summary

In this tutorial we learn how to fix SIBsim4 command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.