NanoSV command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

NanoSV: command not found

or when using sudo you get the following error message

sudo: NanoSV: command not found

Solutions to NanoSV: command not found

How To Fix NanoSV: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu NanoSV is provided by nanosv package.

nanosv is:

NanoSV is a software package that can be used to identify structural genomic variations in long-read sequencing data, such as data produced by Oxford Nanopore Technologies’ MinION, GridION or PromethION instruments, or Pacific Biosciences RSII or Sequel sequencers. NanoSV has been extensively tested using Oxford Nanopore MinION sequencing data.

To fix this problem, we can install more using the command below.

sudo apt-get -y install nanosv

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install nanosv.

sudo apt -y install nanosv

Or if you have aptitude installed you can use the following command.

sudo aptitude install nanosv

Summary

In this tutorial we learn how to fix NanoSV command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.