Jelly.py command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

Jelly.py: command not found

or when using sudo you get the following error message

sudo: Jelly.py: command not found

Solutions to Jelly.py: command not found

How To Fix Jelly.py: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu Jelly.py is provided by pbjelly package.

pbjelly is:

PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes.

PBJelly is part of the PBSuite.

To fix this problem, we can install more using the command below.

sudo apt-get -y install pbjelly

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install pbjelly.

sudo apt -y install pbjelly

Or if you have aptitude installed you can use the following command.

sudo aptitude install pbjelly

Summary

In this tutorial we learn how to fix Jelly.py command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.