yanagiba command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

yanagiba: command not found

or when using sudo you get the following error message

sudo: yanagiba: command not found

Solutions to yanagiba: command not found

How To Fix yanagiba: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu yanagiba is provided by yanagiba package.

yanagiba is:

Yanagiba is used to filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore. It takes fastq.gz and an Albacore summary file as input. If no Albacore summary file is provided attempt to calculate mean qscore from directly from fastq file using NanoMath. Note: Calculated quality scores appear to be lower for reads called with Metrichor, you may need to lower your minqual setting in this case.

To fix this problem, we can install more using the command below.

sudo apt-get -y install yanagiba

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install yanagiba.

sudo apt -y install yanagiba

Or if you have aptitude installed you can use the following command.

sudo aptitude install yanagiba

Summary

In this tutorial we learn how to fix yanagiba command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.