paleomix command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

paleomix: command not found

or when using sudo you get the following error message

sudo: paleomix: command not found

Solutions to paleomix: command not found

How To Fix paleomix: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu paleomix is provided by paleomix package.

paleomix is:

The PALEOMIX pipelines are a set of pipelines and tools designed to aid the rapid processing of High-Throughput Sequencing (HTS) data: The BAM pipeline processes de-multiplexed reads from one or more samples, through sequence processing and alignment, to generate BAM alignment files useful in downstream analyses; the Phylogenetic pipeline carries out genotyping and phylogenetic inference on BAM alignment files, either produced using the BAM pipeline or generated elsewhere; and the Zonkey pipeline carries out a suite of analyses on low coverage equine alignments, in order to detect the presence of F1-hybrids in archaeological assemblages. In addition, PALEOMIX aids in metagenomic analysis of the extracts.

The pipelines have been designed with ancient DNA (aDNA) in mind, and includes several features especially useful for the analyses of ancient samples, but can all be for the processing of modern samples, in order to ensure consistent data processing.

To fix this problem, we can install more using the command below.

sudo apt-get -y install paleomix

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install paleomix.

sudo apt -y install paleomix

Or if you have aptitude installed you can use the following command.

sudo aptitude install paleomix

Summary

In this tutorial we learn how to fix paleomix command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.