make_ataqv_pipeline command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

make_ataqv_pipeline: command not found

or when using sudo you get the following error message

sudo: make_ataqv_pipeline: command not found

Solutions to make_ataqv_pipeline: command not found

How To Fix make_ataqv_pipeline: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu make_ataqv_pipeline is provided by ataqv package.

ataqv is:

A toolkit for measuring and comparing ATAC-seq results, made in the Parker lab at the University of Michigan. They wrote it to help understand how well their ATAC-seq assays had worked, and to make it easier to spot differences that might be caused by library prep or sequencing.

To fix this problem, we can install more using the command below.

sudo apt-get -y install ataqv

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install ataqv.

sudo apt -y install ataqv

Or if you have aptitude installed you can use the following command.

sudo aptitude install ataqv

Summary

In this tutorial we learn how to fix make_ataqv_pipeline command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.