SeqNoise command not found

Introduction

When you run more command in linux terminal / console, you get the following error message

SeqNoise: command not found

or when using sudo you get the following error message

sudo: SeqNoise: command not found

Solutions to SeqNoise: command not found

How To Fix SeqNoise: command not found in Ubuntu / Debian / Kali Linux / Raspbian

In Ubuntu SeqNoise is provided by ampliconnoise package.

ampliconnoise is:

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone “Pyronoise” by the same authors and this package includes an updated version. There is also a “Denoiser” in Qiime which is related but distinct.

To fix this problem, we can install more using the command below.

sudo apt-get -y install ampliconnoise

This command might take some time to finish depending on your machine internet connection.

You can also use apt command to install ampliconnoise.

sudo apt -y install ampliconnoise

Or if you have aptitude installed you can use the following command.

sudo aptitude install ampliconnoise

Summary

In this tutorial we learn how to fix SeqNoise command not found error in Ubuntu / Debian / Kali Linux or Raspbian distribution.